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EUROPAR
2007
Springer
15 years 3 months ago
Compositional Approach Applied to Loop Specialization
An optimizing compiler has a hard time to generate a code which will perform at top speed for an arbitrary data set size. In general, the low level optimization process must take i...
Lamia Djoudi, Jean-Thomas Acquaviva, Denis Barthou
IPPS
2010
IEEE
14 years 7 months ago
Hybrid MPI/Pthreads parallelization of the RAxML phylogenetics code
Abstract--A hybrid MPI/Pthreads parallelization was implemented in the RAxML phylogenetics code. New MPI code was added to the existing Pthreads production code to exploit parallel...
Wayne Pfeiffer, Alexandros Stamatakis
BMCBI
2010
116views more  BMCBI 2010»
14 years 10 months ago
permGPU: Using graphics processing units in RNA microarray association studies
Background: Many analyses of microarray association studies involve permutation, bootstrap resampling and crossvalidation, that are ideally formulated as embarrassingly parallel c...
Ivo D. Shterev, Sin-Ho Jung, Stephen L. George, Ko...
ISCA
2008
IEEE
112views Hardware» more  ISCA 2008»
15 years 4 months ago
Parallelism-Aware Batch Scheduling: Enhancing both Performance and Fairness of Shared DRAM Systems
In a chip-multiprocessor (CMP) system, the DRAM system is shared among cores. In a shared DRAM system, requests from a thread can not only delay requests from other threads by cau...
Onur Mutlu, Thomas Moscibroda
ICDCS
2007
IEEE
15 years 4 months ago
Two-Tier Multiple Query Optimization for Sensor Networks
When there are multiple queries posed to the resourceconstrained wireless sensor network, it is critical to process them efficiently. In this paper, we propose a Two-Tier Multipl...
Shili Xiang, Hock-Beng Lim, Kian-Lee Tan, Yongluan...