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PSB
2001
15 years 3 months ago
A Multithreaded Parallel Implementation of a Dynamic Programming Algorithm for Sequence Comparison
This paper discusses the issues involved in implementing a dynamic programming algorithm for biological sequence comparison on a generalpurpose parallel computing platform based o...
W. S. Martins, Juan del Cuvillo, F. J. Useche, Kev...
PC
2000
160views Management» more  PC 2000»
15 years 2 months ago
Parallel algorithms to solve two-stage stochastic linear programs with robustness constraints
In this paper we present a parallel method for solving two-stage stochastic linear programs with restricted recourse. The mathematical model considered here can be used to represe...
Patrizia Beraldi, Lucio Grandinetti, Roberto Musma...
IPPS
2006
IEEE
15 years 8 months ago
Cache-oblivious simulation of parallel programs
This paper explores the relation between the structured parallelism exposed by the Decomposable BSP (DBSP) model through submachine locality and locality of reference in multi-lev...
Andrea Pietracaprina, Geppino Pucci, Francesco Sil...
IPPS
2000
IEEE
15 years 6 months ago
Combining Fusion Optimizations and Piecewise Execution of Nested Data-Parallel Programs
Abstract. Nested data-parallel programs often have large memory requirements due to their high degree of parallelism. Piecewise execution is an implementation technique used to min...
W. Pfannenstiel
CISIS
2010
IEEE
15 years 7 months ago
A Parallel Programming Framework for Multi-core DNA Sequence Alignment
—A new parallel programming framework for DNA sequence alignment in homogeneous multi-core processor architectures is proposed. Contrasting with traditional coarse-grained parall...
Tiago Jose Barreiros Martins de Almeida, Nuno Fili...