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ICPP
2007
IEEE
15 years 4 months ago
Efficient Parallel Algorithm for Optimal Three-Sequences Alignment
Sequence alignment is a fundamental problem in the computational biology. Many alignment methods have been proposed in the literature, such as pair-wise sequence alignment (2SA), ...
Chun-Yuan Lin, Chen Tai Huang, Yeh-Ching Chung, Ch...
IPPS
1998
IEEE
15 years 2 months ago
Toward a Universal Mapping Algorithm for Accessing Trees in Parallel Memory Systems
We study the problem of mapping the N nodes of a complete t-ary tree on M memory modules so that they can be accessed in parallel by templates, i.e. distinct sets of nodes. Typica...
Vincenzo Auletta, Sajal K. Das, Amelia De Vivo, Ma...
EVOW
2009
Springer
15 years 4 months ago
On the Parallel Speed-Up of Estimation of Multivariate Normal Algorithm and Evolution Strategies
Motivated by parallel optimization, we experiment EDA-like adaptation-rules in the case of λ large. The rule we use, essentially based on estimation of multivariate normal algorit...
Fabien Teytaud, Olivier Teytaud
CLUSTER
2009
IEEE
15 years 2 months ago
Numerically stable, single-pass, parallel statistics algorithms
—Statistical analysis is widely used for countless scientific applications in order to analyze and infer meaning from data. A key challenge of any statistical analysis package a...
Janine Bennett, R. Grout, Philippe P. Pébay...
IPPS
2006
IEEE
15 years 3 months ago
Parallel implementation of the replica exchange molecular dynamics algorithm on Blue Gene/L
The Replica Exchange method is a popular approach for studying the folding thermodynamics of small to modest size proteins in explicit solvent, since it is easily parallelized. Ho...
Maria Eleftheriou, Aleksandr Rayshubskiy, Jed W. P...