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TC
2010
15 years 1 months ago
Network-on-Chip Hardware Accelerators for Biological Sequence Alignment
—The most pervasive compute operation carried out in almost all bioinformatics applications is pairwise sequence homology detection (or sequence alignment). Due to exponentially ...
Souradip Sarkar, Gaurav Ramesh Kulkarni, Partha Pr...
158
Voted
IHI
2010
198views Healthcare» more  IHI 2010»
14 years 10 months ago
Large-scale multimodal mining for healthcare with mapreduce
Recent advances in healthcare and bioscience technologies and proliferation of portable medical devices are producing massive amounts of multimodal data. The need for parallel pro...
Fei Wang, Vuk Ercegovac, Tanveer Fathima Syeda-Mah...
BMCBI
2011
14 years 9 months ago
Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars
Background: The prediction of the structure of large RNAs remains a particular challenge in bioinformatics, due to the computational complexity and low levels of accuracy of state...
Zsuzsanna Sukosd, Bjarne Knudsen, Morten Vaerum, J...
147
Voted
SIGMOD
2012
ACM
226views Database» more  SIGMOD 2012»
13 years 5 months ago
SkewTune: mitigating skew in mapreduce applications
We present an automatic skew mitigation approach for userdefined MapReduce programs and present SkewTune, a system that implements this approach as a drop-in replacement for an e...
YongChul Kwon, Magdalena Balazinska, Bill Howe, Je...
SDM
2012
SIAM
297views Data Mining» more  SDM 2012»
13 years 5 months ago
A Flexible Open-Source Toolbox for Scalable Complex Graph Analysis
The Knowledge Discovery Toolbox (KDT) enables domain experts to perform complex analyses of huge datasets on supercomputers using a high-level language without grappling with the ...
Adam Lugowski, David M. Alber, Aydin Buluç,...
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