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SAC
2009
ACM
15 years 10 months ago
GTfold: a scalable multicore code for RNA secondary structure prediction
The prediction of the correct secondary structures of large RNAs is one of the unsolved challenges of computational molecular biology. Among the major obstacles is the fact that a...
Amrita Mathuriya, David A. Bader, Christine E. Hei...
ISCA
2006
IEEE
187views Hardware» more  ISCA 2006»
15 years 9 months ago
A Case for MLP-Aware Cache Replacement
Performance loss due to long-latency memory accesses can be reduced by servicing multiple memory accesses concurrently. The notion of generating and servicing long-latency cache m...
Moinuddin K. Qureshi, Daniel N. Lynch, Onur Mutlu,...
SIGMOD
2010
ACM
214views Database» more  SIGMOD 2010»
15 years 8 months ago
ParaTimer: a progress indicator for MapReduce DAGs
Time-oriented progress estimation for parallel queries is a challenging problem that has received only limited attention. In this paper, we present ParaTimer, a new type of timere...
Kristi Morton, Magdalena Balazinska, Dan Grossman
121
Voted
SPAA
1997
ACM
15 years 6 months ago
Efficient Detection of Determinacy Races in Cilk Programs
A parallel multithreaded program that is ostensibly deterministic may nevertheless behave nondeterministically due to bugs in the code. These bugs are called determinacy races, an...
Mingdong Feng, Charles E. Leiserson
123
Voted
ICS
2009
Tsinghua U.
15 years 1 months ago
Refereeing conflicts in hardware transactional memory
In the search for high performance, most transactional memory (TM) systems execute atomic blocks concurrently and must thus be prepared for data conflicts. The TM system must then...
Arrvindh Shriraman, Sandhya Dwarkadas