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» Parallel external memory graph algorithms
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OOPSLA
2005
Springer
15 years 3 months ago
Lifting sequential graph algorithms for distributed-memory parallel computation
This paper describes the process used to extend the Boost Graph Library (BGL) for parallel operation with distributed memory. The BGL consists of a rich set of generic graph algor...
Douglas Gregor, Andrew Lumsdaine
BMCBI
2010
189views more  BMCBI 2010»
14 years 9 months ago
Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs
Background: Assembling genomic sequences from a set of overlapping reads is one of the most fundamental problems in computational biology. Algorithms addressing the assembly probl...
Vamsi Kundeti, Sanguthevar Rajasekaran, Hieu Dinh,...
ISCA
2002
IEEE
174views Hardware» more  ISCA 2002»
14 years 9 months ago
Efficient Task Partitioning Algorithms for Distributed Shared Memory Systems
In this paper, we consider the tree task graphs which arise from many important programming paradigms such as divide and conquer, branch and bound etc., and the linear task-graphs...
Sibabrata Ray, Hong Jiang
SPAA
2004
ACM
15 years 3 months ago
Cache-oblivious shortest paths in graphs using buffer heap
We present the Buffer Heap (BH), a cache-oblivious priority queue that supports Delete-Min, Delete, and Decrease-Key operations in O( 1 B log2 N B ) amortized block transfers fro...
Rezaul Alam Chowdhury, Vijaya Ramachandran
PPOPP
2012
ACM
13 years 5 months ago
Massively parallel breadth first search using a tree-structured memory model
Analysis of massive graphs has emerged as an important area for massively parallel computation. In this paper, it is shown how the Fresh Breeze trees-of-chunks memory model may be...
Tom St. John, Jack B. Dennis, Guang R. Gao