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SASP
2009
IEEE
291views Hardware» more  SASP 2009»
15 years 4 months ago
A parameterisable and scalable Smith-Waterman algorithm implementation on CUDA-compatible GPUs
—This paper describes a multi-threaded parallel design and implementation of the Smith-Waterman (SM) algorithm on compute unified device architecture (CUDA)-compatible graphic pr...
Cheng Ling, Khaled Benkrid, Tsuyoshi Hamada
FCCM
2008
IEEE
212views VLSI» more  FCCM 2008»
15 years 3 months ago
Map-reduce as a Programming Model for Custom Computing Machines
The map-reduce model requires users to express their problem in terms of a map function that processes single records in a stream, and a reduce function that merges all mapped out...
Jackson H. C. Yeung, C. C. Tsang, Kuen Hung Tsoi, ...
IEEEPACT
2008
IEEE
15 years 3 months ago
Pangaea: a tightly-coupled IA32 heterogeneous chip multiprocessor
Moore’s Law and the drive towards performance efficiency have led to the on-chip integration of general-purpose cores with special-purpose accelerators. Pangaea is a heterogeneo...
Henry Wong, Anne Bracy, Ethan Schuchman, Tor M. Aa...
CONCUR
2007
Springer
15 years 3 months ago
Rule-Based Modelling of Cellular Signalling
Abstract. Modelling is becoming a necessity in studying biological signalling pathways, because the combinatorial complexity of such systems rapidly overwhelms intuitive and qualit...
Vincent Danos, Jérôme Feret, Walter F...
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MIDDLEWARE
2007
Springer
15 years 3 months ago
Interactive Resource-Intensive Applications Made Easy
Snowbird is a middleware system based on virtual machine (VM) technology that simplifies the development and deployment of bimodal applications. Such applications alternate betwee...
H. Andrés Lagar-Cavilla, Niraj Tolia, Eyal ...