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IPPS
2006
IEEE
15 years 3 months ago
Parallel implementation and performance characterization of MUSCLE
Multiple sequence alignment is a fundamental and very computationally intensive task in molecular biology. MUSCLE, a new algorithm for creating multiple alignments of protein sequ...
Xi Deng, Eric Li, Jiulong Shan, Wenguang Chen
IPPS
2010
IEEE
14 years 7 months ago
Initial characterization of parallel NFS implementations
Parallel NFS (pNFS) is touted as an emergent standard protocol for parallel I/O access in various storage environments. Several pNFS prototypes have been implemented for initial v...
Weikuan Yu, Jeffrey S. Vetter
EUROPAR
2007
Springer
15 years 3 months ago
Fine Tuning Algorithmic Skeletons
Abstract. Algorithmic skeletons correspond to a high-level programming model that takes advantage of nestable programming patterns to hide the complexity of parallel/distributed ap...
Denis Caromel, Mario Leyton
CLUSTER
2006
IEEE
15 years 1 months ago
A Performance Instrumentation Framework to Characterize Computation-Communication Overlap in Message-Passing Systems
Effective overlap of computation and communication is a well understood technique for latency hiding and can yield significant performance gains for applications on high-end compu...
Aniruddha G. Shet, P. Sadayappan, David E. Bernhol...
GRID
2004
Springer
15 years 3 months ago
Toward Characterizing the Performance of SOAP Toolkits
The SOAP protocol underpins Web services as the standard mechanism for exchanging information in a distributed environment. The XML-based protocol offers advantages including exte...
Madhusudhan Govindaraju, Aleksander Slominski, Ken...