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» Parallel matrix algorithms and applications
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ISHPC
2003
Springer
15 years 9 months ago
Performance Study of a Whole Genome Comparison Tool on a Hyper-Threading Multiprocessor
We developed a multithreaded parallel implementation of a sequence alignment algorithm that is able to align whole genomes with reliable output and reasonable cost. This paper pres...
Juan del Cuvillo, Xinmin Tian, Guang R. Gao, Milin...
AISB
1994
Springer
15 years 8 months ago
Formal Memetic Algorithms
Abstract. A formal, representation-independent form of a memetic algorithm-a genetic algorithm incorporating local search--is introduced. A generalisedform of N-point crossover is ...
Nicholas J. Radcliffe, Patrick D. Surry
TOG
2012
230views Communications» more  TOG 2012»
13 years 6 months ago
Decoupling algorithms from schedules for easy optimization of image processing pipelines
Using existing programming tools, writing high-performance image processing code requires sacrificing readability, portability, and modularity. We argue that this is a consequenc...
Jonathan Ragan-Kelley, Andrew Adams, Sylvain Paris...
BMCBI
2010
65views more  BMCBI 2010»
15 years 4 months ago
VIPR: A probabilistic algorithm for analysis of microbial detection microarrays
Background: All infectious disease oriented clinical diagnostic assays in use today focus on detecting the presence of a single, well defined target agent or a set of agents. In r...
Adam F. Allred, Guang Wu, Tuya Wulan, Kael F. Fisc...
INFOCOM
2005
IEEE
15 years 9 months ago
Practical algorithms for performance guarantees in buffered crossbars
— This paper is about high capacity switches and routers that give guaranteed throughput, rate and delay guarantees. Many routers are built using input queueing or combined input...
Shang-Tse Chuang, Sundar Iyer, Nick McKeown