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» Parallel programming with object assemblies
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87
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HPDC
2000
IEEE
15 years 4 months ago
Event Services for High Performance Computing
The Internet and the Grid are changing the face of high performance computing. Rather than tightly-coupled SPMD-style components running in a single cluster, on a parallel machine...
Greg Eisenhauer, Fabián E. Bustamante, Kars...
IPPS
2009
IEEE
15 years 7 months ago
Accelerating error correction in high-throughput short-read DNA sequencing data with CUDA
Emerging DNA sequencing technologies open up exciting new opportunities for genome sequencing by generating read data with a massive throughput. However, produced reads are signif...
Haixiang Shi, Bertil Schmidt, Weiguo Liu, Wolfgang...
FPL
2010
Springer
188views Hardware» more  FPL 2010»
14 years 10 months ago
SeqHive: A Reconfigurable Computer Cluster for Genome Re-sequencing
We demonstrate how Field Programmable Gate Arrays (FPGAs) may be used to address the computing challenges associated with assembling genome sequences from recent ultra-high-through...
Kristian Stevens, Henry Chen, Terry Filiba, Peter ...
97
Voted
VL
2003
IEEE
139views Visual Languages» more  VL 2003»
15 years 5 months ago
Programming in a data factory
Among the advantages of visual dataflow programming is that it can give the user a sense of location for the data in a computation. This can help novices build a mental picture of...
Steven L. Tanimoto
123
Voted
JCC
2008
125views more  JCC 2008»
15 years 13 days ago
Efficient electronic integrals and their generalized derivatives for object oriented implementations of electronic structure cal
: For the new parallel implementation of electronic structure methods in ACES III (Lotrich et al., in preparation) the present state-of-the-art algorithms for the evaluation of ele...
Norbert Flocke, Victor Lotrich