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BMCBI
2010
160views more  BMCBI 2010»
13 years 6 months ago
Annotation of gene promoters by integrative data-mining of ChIP-seq Pol-II enrichment data
Background: Use of alternative gene promoters that drive widespread cell-type, tissue-type or developmental gene regulation in mammalian genomes is a common phenomenon. Chromatin ...
Ravi Gupta, Priyankara Wikramasinghe, Anirban Bhat...
SODA
2012
ACM
191views Algorithms» more  SODA 2012»
11 years 8 months ago
Submatrix maximum queries in Monge matrices and Monge partial matrices, and their applications
We describe a data structure for submatrix maximum queries in Monge matrices or Monge partial matrices, where a query specifies a contiguous submatrix of the given matrix, and it...
Haim Kaplan, Shay Mozes, Yahav Nussbaum, Micha Sha...
FCT
2009
Springer
14 years 27 days ago
Competitive Group Testing and Learning Hidden Vertex Covers with Minimum Adaptivity
Suppose that we are given a set of n elements d of which are “defective”. A group test can check for any subset, called a pool, whether it contains a defective. It is well know...
Peter Damaschke, Azam Sheikh Muhammad
BMCBI
2010
96views more  BMCBI 2010»
13 years 6 months ago
ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data
Background: Chromatin immunoprecipitation (ChIP) followed by high-throughput sequencing (ChIP-seq) or ChIP followed by genome tiling array analysis (ChIP-chip) have become standar...
Lihua J. Zhu, Claude Gazin, Nathan D. Lawson, Herv...
CN
2011
176views more  CN 2011»
12 years 10 months ago
Taming the elephants: New TCP slow start
Standard slow start does not work well under large bandwidthdelay product (BDP) networks. We find two causes of this problem in existing three popular operating systems, Linux, F...
Sangtae Ha, Injong Rhee
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