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» Parallelism in Gene Assembly
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JCP
2008
121views more  JCP 2008»
14 years 9 months ago
Towards Design Space Exploration for Biological Systems
For both embedded systems and biological cell systems, design is a feature that defines their identity. The assembly of different components in designs of both systems can vary wid...
Simon Polstra, Tessa E. Pronk, Andy D. Pimentel, T...
NAR
2006
84views more  NAR 2006»
14 years 9 months ago
Zinc Finger Tools: custom DNA-binding domains for transcription factors and nucleases
Individual zinc finger (ZF) domains that recognize DNA triplets with high specificity and affinity can be used to create designer transcription factors and nucleases that are spec...
Jeffrey G. Mandell, Carlos F. Barbas III
CNHPCA
2009
Springer
15 years 4 months ago
Development of a Scalable Solver for the Earth's Core Convection
A scalable parallel solver is developed to simulate the Earth’s core convection. With the help from the “multiphysics” data structure and the restricted additive Schwarz prec...
Chao Yang, Ligang Li, Yunquan Zhang
IPPS
2008
IEEE
15 years 4 months ago
Impact of multicores on large-scale molecular dynamics simulations
Processing nodes of the Cray XT and IBM Blue Gene Massively Parallel Processing (MPP) systems are composed of multiple execution units, sharing memory and network subsystems. Thes...
Sadaf R. Alam, Pratul K. Agarwal, Scott S. Hampton...
BMCBI
2005
246views more  BMCBI 2005»
14 years 9 months ago
ParPEST: a pipeline for EST data analysis based on parallel computing
Background: Expressed Sequence Tags (ESTs) are short and error-prone DNA sequences generated from the 5' and 3' ends of randomly selected cDNA clones. They provide an im...
Nunzio D'Agostino, Mario Aversano, Maria Luisa Chi...