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» Parallelism in Gene Assembly
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BMCBI
2008
204views more  BMCBI 2008»
14 years 9 months ago
EST2uni: an open, parallel tool for automated EST analysis and database creation, with a data mining web interface and microarra
Background: Expressed sequence tag (EST) collections are composed of a high number of single-pass, redundant, partial sequences, which need to be processed, clustered, and annotat...
Javier Forment, Francisco Gilabert Villamón...
CBMS
2007
IEEE
15 years 4 months ago
An Unsupervised and Fully-Automated Image Analysis Method for cDNA Microarrays
Microarray gene expression image analysis is a labor-intensive task and requires human intervention since microarray images are contaminated with noise and artifacts while spots a...
Eleni Zacharia, Dimitrios E. Maroulis
ICCS
2003
Springer
15 years 2 months ago
Parallelisation of Sparse Grids for Large Scale Data Analysis
Sparse Grids are the basis for efficient high dimensional approximation and have recently been applied successfully to predictive modelling. They are spanned by a collection of si...
Jochen Garcke, Markus Hegland, Ole Møller N...
IPPS
2006
IEEE
15 years 3 months ago
Lossless compression for large scale cluster logs
The growing computational and storage needs of several scientific applications mandate the deployment of extreme-scale parallel machines, such as IBM’s Blue Gene/L which can acc...
R. Balakrishnan, Ramendra K. Sahoo
FPL
2010
Springer
188views Hardware» more  FPL 2010»
14 years 7 months ago
SeqHive: A Reconfigurable Computer Cluster for Genome Re-sequencing
We demonstrate how Field Programmable Gate Arrays (FPGAs) may be used to address the computing challenges associated with assembling genome sequences from recent ultra-high-through...
Kristian Stevens, Henry Chen, Terry Filiba, Peter ...