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» Parallelism in Gene Assembly
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BMCBI
2007
152views more  BMCBI 2007»
14 years 9 months ago
Bioinformatic identification of novel putative photoreceptor specific cis-elements
Background: Cell specific gene expression is largely regulated by different combinations of transcription factors that bind cis-elements in the upstream promoter sequence. However...
Charles G. Danko, Vera A. McIlvain, Maochun Qin, B...
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BMCBI
2007
131views more  BMCBI 2007»
14 years 9 months ago
On the detection of functionally coherent groups of protein domains with an extension to protein annotation
Background: Protein domains coordinate to perform multifaceted cellular functions, and domain combinations serve as the functional building blocks of the cell. The available metho...
William A. McLaughlin, Ken Chen, Tingjun Hou, Wei ...
NAR
2011
208views Computer Vision» more  NAR 2011»
14 years 16 days ago
The UCSC Genome Browser database: update 2011
The University of California, Santa Cruz Genome Browser (http://genome.ucsc.edu) offers online access to a database of genomic sequence and annotation data for a wide variety of o...
Pauline A. Fujita, Brooke L. Rhead, Ann S. Zweig, ...
WEA
2005
Springer
176views Algorithms» more  WEA 2005»
15 years 3 months ago
High-Performance Algorithm Engineering for Large-Scale Graph Problems and Computational Biology
Abstract. Many large-scale optimization problems rely on graph theoretic solutions; yet high-performance computing has traditionally focused on regular applications with high degre...
David A. Bader
APCSAC
2007
IEEE
15 years 4 months ago
Open Issues in MPI Implementation
MPI (the Message Passing Interface) continues to be the dominant programming model for parallel machines of all sizes, from small Linux clusters to the largest parallel supercomput...
Rajeev Thakur, William Gropp