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» Parallelization of GSL: Performance of Case Studies
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BMCBI
2005
246views more  BMCBI 2005»
14 years 9 months ago
ParPEST: a pipeline for EST data analysis based on parallel computing
Background: Expressed Sequence Tags (ESTs) are short and error-prone DNA sequences generated from the 5' and 3' ends of randomly selected cDNA clones. They provide an im...
Nunzio D'Agostino, Mario Aversano, Maria Luisa Chi...
BMCBI
2010
132views more  BMCBI 2010»
14 years 9 months ago
Parallel multiplicity and error discovery rate (EDR) in microarray experiments
Background: In microarray gene expression profiling experiments, differentially expressed genes (DEGs) are detected from among tens of thousands of genes on an array using statist...
Wayne Wenzhong Xu, Clay J. Carter
PRESENCE
2010
76views more  PRESENCE 2010»
14 years 4 months ago
Modularity for Large Virtual Reality Applications
This paper focuses on the design of high performance VR applications. These applications usually involve various I/O devices and complex simulations. A parallel architecture or gri...
Jérémie Allard, Jean-Denis Lesage, B...
ICDCS
1997
IEEE
15 years 1 months ago
Supporting Dynamic Space-sharing on Clusters of Non-dedicated Workstations
Clusters of workstations are increasingly being viewed as a cost-e ective alternative to parallel supercomputers. However, resource management and scheduling on workstations clust...
Abdur Chowdhury, Lisa D. Nicklas, Sanjeev Setia, E...
CC
2008
Springer
193views System Software» more  CC 2008»
14 years 11 months ago
Automatic Transformations for Communication-Minimized Parallelization and Locality Optimization in the Polyhedral Model
The polyhedral model provides powerful abstractions to optimize loop nests with regular accesses. Affine transformations in this model capture a complex sequence of execution-reord...
Uday Bondhugula, Muthu Manikandan Baskaran, Sriram...