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ICPP
2007
IEEE
15 years 8 months ago
Efficient Parallel Algorithm for Optimal Three-Sequences Alignment
Sequence alignment is a fundamental problem in the computational biology. Many alignment methods have been proposed in the literature, such as pair-wise sequence alignment (2SA), ...
Chun-Yuan Lin, Chen Tai Huang, Yeh-Ching Chung, Ch...
IEEEHPCS
2010
15 years 17 days ago
Discovering closed frequent itemsets on multicore: Parallelizing computations and optimizing memory accesses
The problem of closed frequent itemset discovery is a fundamental problem of data mining, having applications in numerous domains. It is thus very important to have efficient par...
Benjamin Négrevergne, Alexandre Termier, Je...
PPDP
2005
Springer
15 years 7 months ago
Heuristics, optimizations, and parallelism for protein structure prediction in CLP(FD)
The paper describes a constraint-based solution to the protein folding problem on face-centered cubic lattices—a biologically meaningful approximation of the general protein fol...
Alessandro Dal Palù, Agostino Dovier, Enric...
EOR
2010
113views more  EOR 2010»
15 years 2 months ago
Optimal solutions for unrelated parallel machines scheduling problems using convex quadratic reformulations
We consider the unrelated parallel machines scheduling problem where jobs have earliness and tardiness penalties and a common due date. We formulate this problem and some of its v...
Marie-Christine Plateau, Yasmin A. Rios-Solis
SIGCOMM
2009
ACM
15 years 8 months ago
Optimizing the BSD routing system for parallel processing
The routing architecture of the original 4.4BSD [3] kernel has been deployed successfully without major design modification for over 15 years. In the unified routing architectur...
Qing Li, Kip Macy