: Cloud infrastructures enable the efficient parallel execution of data-intensive tasks such as entity resolution on large datasets. We investigate challenges and possible solution...
We present parallel and sequential dense QR factorization algorithms that are optimized to avoid communication. Some of these are novel, and some extend earlier work. Communicatio...
James Demmel, Laura Grigori, Mark Hoemmen, Julien ...
In this paper we describe the parallelization of a dynamic programming algorithm used to find common RNA secondary structures including pseudoknots and similar structures. The se...
This paper presents a new algorithm for computing the singular value decomposition (SVD) on multilevel memory hierarchy architectures. This algorithm is based on one-sided JRS iter...
Mostafa I. Soliman, Sanguthevar Rajasekaran, Reda ...
RNA pseudoknot prediction is an algorithm for RNA sequence search and alignment. An important building block towards pseudoknot prediction is RNA secondary structure prediction. T...