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CORR
2010
Springer
143views Education» more  CORR 2010»
15 years 3 months ago
Parallel Sorted Neighborhood Blocking with MapReduce
: Cloud infrastructures enable the efficient parallel execution of data-intensive tasks such as entity resolution on large datasets. We investigate challenges and possible solution...
Lars Kolb, Andreas Thor, Erhard Rahm
114
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CORR
2008
Springer
76views Education» more  CORR 2008»
15 years 3 months ago
Communication-avoiding parallel and sequential QR factorizations
We present parallel and sequential dense QR factorization algorithms that are optimized to avoid communication. Some of these are novel, and some extend earlier work. Communicatio...
James Demmel, Laura Grigori, Mark Hoemmen, Julien ...
IPPS
2009
IEEE
15 years 10 months ago
Dynamic parallelization for RNA structure comparison
In this paper we describe the parallelization of a dynamic programming algorithm used to find common RNA secondary structures including pseudoknots and similar structures. The se...
Eric Snow, Eric Aubanel, Patricia Evans
HPCC
2007
Springer
15 years 10 months ago
A Block JRS Algorithm for Highly Parallel Computation of SVDs
This paper presents a new algorithm for computing the singular value decomposition (SVD) on multilevel memory hierarchy architectures. This algorithm is based on one-sided JRS iter...
Mostafa I. Soliman, Sanguthevar Rajasekaran, Reda ...
ICPP
2006
IEEE
15 years 10 months ago
A Parallel, Out-of-Core Algorithm for RNA Secondary Structure Prediction
RNA pseudoknot prediction is an algorithm for RNA sequence search and alignment. An important building block towards pseudoknot prediction is RNA secondary structure prediction. T...
Wenduo Zhou, David K. Lowenthal