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CSB
2005
IEEE
139views Bioinformatics» more  CSB 2005»
15 years 9 months ago
Using Parallel Algorithms for Searching Molecular Sequence Databases
This work presents the development of algorithms for approximate string matching using parallel methods. It intends to do the maximum of molecular sequences comparisons per unity ...
Carla Correa Tavares dos Reis, Rubem P. Mondaini
IPPS
2003
IEEE
15 years 9 months ago
Parallel Detection of Regulatory Elements with gMP
The detection of regulatory elements from a large set of regulatory regions is a challenging problem in computational genomics. However, computational methods to extract this biol...
Bertil Schmidt, Lin Feng, Amey V. Laud, Yusdi Sant...
IPPS
2002
IEEE
15 years 9 months ago
Parallel Genehunter: Implementation of a Linkage Analysis Package for Distributed-Memory Architectures
We present a parallel algorithm for performing multipoint linkage analysis of genetic marker data on large family pedigrees. The algorithm effectively distributes both the computa...
Gavin C. Conant, Steve Plimpton, William Old, Andr...
PVM
1999
Springer
15 years 8 months ago
JPT: A Java Parallelization Tool
Abstract. PVM is a succesfull programming environment for distributed computing in the languages C and Fortran. Recently several implementations of PVM for Java have been added, ma...
Kristof Beyls, Erik H. D'Hollander, Yijun Yu
123
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IEEEPACT
1998
IEEE
15 years 8 months ago
Exploiting Method-Level Parallelism in Single-Threaded Java Programs
Method speculation of object-oriented programs attempts to exploit method-level parallelism (MLP) by executing sequential method invocations in parallel, while still maintaining c...
Michael K. Chen, Kunle Olukotun