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AB
2007
Springer
15 years 3 months ago
Analyzing Pathways Using SAT-Based Approaches
Abstract. A network of reactions is a commonly used paradigm for representing knowledge about a biological process. How does one understand such generic networks and answer queries...
Ashish Tiwari, Carolyn L. Talcott, Merrill Knapp, ...
WABI
2005
Springer
124views Bioinformatics» more  WABI 2005»
15 years 3 months ago
Reconstructing Metabolic Networks Using Interval Analysis
Recently, there has been growing interest in the modelling and simulation of biological systems. Such systems are often modelled in terms of coupled ordinary differential equation...
Warwick Tucker, Vincent Moulton
BMCBI
2010
233views more  BMCBI 2010»
14 years 9 months ago
Odefy -- From discrete to continuous models
Background: Phenomenological information about regulatory interactions is frequently available and can be readily converted to Boolean models. Fully quantitative models, on the ot...
Jan Krumsiek, Sebastian Pölsterl, Dominik M. ...
73
Voted
BIBM
2009
IEEE
183views Bioinformatics» more  BIBM 2009»
15 years 2 months ago
Modeling Protein Interaction Networks with Answer Set Programming
—In this paper we propose the use of answer set programming (ASP) to model protein interaction networks. We argue that this declarative formalism rivals the popular boolean netwo...
Timur Fayruzov, Martine De Cock, Chris Cornelis, D...
JSW
2010
83views more  JSW 2010»
14 years 8 months ago
Estimating Model Parameters of Conditioned Soils by using Artificial Network
—The parameter identification of nonlinear constitutive model of soil mass is based on an inverse analysis procedure, which consists of minimizing the objective function represen...
Zichang Shangguan, Shouju Li, Wei Sun, Maotian Lua...