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» Pathway Logic: Executable Models of Biological Networks
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ECCB
2008
IEEE
14 years 11 months ago
Temporal logic patterns for querying dynamic models of cellular interaction networks
Abstract: Models of the dynamics of cellular interaction networks have become increasingly larger in recent years. Formal verification based on model checking provides a powerful t...
Pedro T. Monteiro, Delphine Ropers, Radu Mateescu,...
CIBB
2009
15 years 22 days ago
On the Use of Temporal Formal Logic to Model Gene Regulatory Networks
Modelling activities in molecular biology face the difficulty of prediction to link molecular knowledge with cell phenotypes. Even when the interaction graph between molecules is k...
Gilles Bernot, Jean-Paul Comet
CORR
2010
Springer
136views Education» more  CORR 2010»
14 years 11 months ago
On the Implementation of the Probabilistic Logic Programming Language ProbLog
The past few years have seen a surge of interest in the field of probabilistic logic learning and statistical relational learning. In this endeavor, many probabilistic logics have...
Angelika Kimmig, Bart Demoen, Luc De Raedt, V&iacu...
BCB
2010
127views Bioinformatics» more  BCB 2010»
14 years 6 months ago
A novel network model for molecular prognosis
Network-based genome-wide association studies (NWAS) utilize the molecular interactions between genes and functional pathways in biomarker identification. This study presents a no...
Ying-Wooi Wan, Swetha Bose, James Denvir, Nancy La...
LSGRID
2004
Springer
15 years 5 months ago
Distributed Cell Biology Simulations with E-Cell System
Many useful applications of simulation in computational cell biology, e.g. kinetic parameter estimation, Metabolic Control Analysis (MCA), and bifurcation analysis, require a large...
Masahiro Sugimoto, Kouichi Takahashi, Tomoya Kitay...