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» Pathway Logic: Executable Models of Biological Networks
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APLAS
2007
ACM
15 years 3 months ago
Scalable Simulation of Cellular Signaling Networks
Abstract. Given the combinatorial nature of cellular signalling pathways, where biological agents can bind and modify each other in a large number of ways, concurrent or agent-base...
Vincent Danos, Jérôme Feret, Walter F...
IJCNN
2007
IEEE
15 years 6 months ago
Computational Templates, Neural Network Dynamics, and Symbolic Logic
— The relationship between subsymbolic neural networks and symbolic logical systems is discussed from the point of view of the account of computational science by Paul Humphreys ...
Otto Lappi
102
Voted
ISCA
2007
IEEE
196views Hardware» more  ISCA 2007»
15 years 6 months ago
Anton, a special-purpose machine for molecular dynamics simulation
The ability to perform long, accurate molecular dynamics (MD) simulations involving proteins and other biological macromolecules could in principle provide answers to some of the ...
David E. Shaw, Martin M. Deneroff, Ron O. Dror, Je...
DANCE
2002
IEEE
15 years 4 months ago
Maude as a Wide-Spectrum Framework for Formal Modeling and Analysis of Active Networks
Modeling and formally analyzing active network systems and protocols is quite challenging, due to their highly dynamic nature and the need for new network models. We propose a wid...
José Meseguer, Peter Csaba Ölveczky, M...
BMCBI
2010
167views more  BMCBI 2010»
14 years 11 months ago
BisoGenet: a new tool for gene network building, visualization and analysis
Background: The increasing availability and diversity of omics data in the post-genomic era offers new perspectives in most areas of biomedical research. Graph-based biological ne...
Alexander Martin, Maria Elena Ochagavia, Laya C. R...