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» Pathway Logic: Executable Models of Biological Networks
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BIBM
2009
IEEE
183views Bioinformatics» more  BIBM 2009»
15 years 4 months ago
Modeling Protein Interaction Networks with Answer Set Programming
—In this paper we propose the use of answer set programming (ASP) to model protein interaction networks. We argue that this declarative formalism rivals the popular boolean netwo...
Timur Fayruzov, Martine De Cock, Chris Cornelis, D...
EIS
2011
253views ECommerce» more  EIS 2011»
14 years 6 months ago
A modelling and reasoning framework for social networks policies
Policy languages (such as privacy and rights) have had little impact on the wider community. Now that Social Networks have taken off, the need to revisit Policy languages and real...
Guido Governatori, Renato Iannella
BMCBI
2004
185views more  BMCBI 2004»
14 years 11 months ago
Linear fuzzy gene network models obtained from microarray data by exhaustive search
Background: Recent technological advances in high-throughput data collection allow for experimental study of increasingly complex systems on the scale of the whole cellular genome...
Bahrad A. Sokhansanj, J. Patrick Fitch, Judy N. Qu...
ARC
2009
Springer
175views Hardware» more  ARC 2009»
15 years 6 months ago
A Hardware Accelerated Simulation Environment for Spiking Neural Networks
Spiking Neural Networks (SNNs) model the biological functions of the human brain enabling neuro/computer scientists to investigate how arrays of neurons can be used to solve comput...
Brendan P. Glackin, Jim Harkin, T. Martin McGinnit...
WABI
2009
Springer
124views Bioinformatics» more  WABI 2009»
15 years 6 months ago
Mimosa: Mixture Model of Co-expression to Detect Modulators of Regulatory Interaction
Background: Functionally related genes tend to be correlated in their expression patterns across multiple conditions and/or tissue-types. Thus co-expression networks are often use...
Matthew Hansen, Logan Everett, Larry Singh, Sridha...