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» Pathway Logic: Executable Models of Biological Networks
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ICCABS
2011
14 years 3 months ago
High-performance biocomputing for simulating the spread of contagion over large contact networks
Abstract—Many important biological problems can be modeled as contagion diffusion processes over interaction networks. This paper shows how the EpiSimdemics interaction-based sim...
Keith R. Bisset, Ashwin M. Aji, Madhav V. Marathe,...
SP
2009
IEEE
155views Security Privacy» more  SP 2009»
15 years 6 months ago
A Logic of Secure Systems and its Application to Trusted Computing
We present a logic for reasoning about properties of secure systems. The logic is built around a concurrent programming language with constructs for modeling machines with shared ...
Anupam Datta, Jason Franklin, Deepak Garg, Dilsun ...
CIKM
2009
Springer
15 years 6 months ago
A query language for analyzing networks
With more and more large networks becoming available, mining and querying such networks are increasingly important tasks which are not being supported by database models and query...
Anton Dries, Siegfried Nijssen, Luc De Raedt
BMCBI
2010
110views more  BMCBI 2010»
14 years 11 months ago
TimeDelay-ARACNE: Reverse engineering of gene networks from time-course data by an information theoretic approach
Background: One of main aims of Molecular Biology is the gain of knowledge about how molecular components interact each other and to understand gene function regulations. Using mi...
Pietro Zoppoli, Sandro Morganella, Michele Ceccare...
HYBRID
2007
Springer
15 years 5 months ago
Model Checking Genetic Regulatory Networks with Parameter Uncertainty
The lack of precise numerical information for the values of biological parameters severely limits the development and analysis of models of genetic regulatory networks. To deal wit...
Grégory Batt, Calin Belta, Ron Weiss