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» Pathway Logic: Executable Models of Biological Networks
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BMCBI
2007
144views more  BMCBI 2007»
14 years 11 months ago
Accelerated search for biomolecular network models to interpret high-throughput experimental data
Background: The functions of human cells are carried out by biomolecular networks, which include proteins, genes, and regulatory sites within DNA that encode and control protein e...
Suman Datta, Bahrad A. Sokhansanj
RECOMB
2006
Springer
16 years 1 hour ago
Genome-Wide Discovery of Modulators of Transcriptional Interactions in Human B Lymphocytes
Abstract. Transcriptional interactions in a cell are modulated by a variety of mechanisms that prevent their representation as pure pairwise interactions between a transcription fa...
Kai Wang, Ilya Nemenman, Nilanjana Banerjee, Adam ...
BC
2000
95views more  BC 2000»
14 years 11 months ago
Cerebellar learning of accurate predictive control for fast-reaching movements
Long conduction delays in the nervous system prevent the accurate control of movements by feedback control alone. We present a new, biologically plausible cerebellar model to study...
Jacob Spoelstra, Nicolas Schweighofer, Michael A. ...
ASIAN
2006
Springer
116views Algorithms» more  ASIAN 2006»
15 years 3 months ago
Secrecy Analysis in Protocol Composition Logic
We present formal proof rules for inductive reasoning about the way that data transmitted on the network remains secret from a malicious attacker. Extending a compositional protoco...
Arnab Roy, Anupam Datta, Ante Derek, John C. Mitch...
BMCBI
2010
191views more  BMCBI 2010»
14 years 11 months ago
BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions
Background: Genome-scale metabolic reconstructions under the Constraint Based Reconstruction and Analysis (COBRA) framework are valuable tools for analyzing the metabolic capabili...
Jan Schellenberger, Junyoung O. Park, Tom M. Conra...