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» Pathway Logic: Executable Models of Biological Networks
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BMCBI
2008
122views more  BMCBI 2008»
14 years 11 months ago
Reconstructing networks of pathways via significance analysis of their intersections
Background: Significance analysis at single gene level may suffer from the limited number of samples and experimental noise that can severely limit the power of the chosen statist...
Mirko Francesconi, Daniel Remondini, Nicola Nerett...
ICANN
2007
Springer
15 years 5 months ago
A Simple Model of Cortical Activations During Both Observation and Execution of Reach-to-Grasp Movements
We discuss evidence for the existence of mirror systems in the brain, including recent experimental results that demonstrate the use of shared pathways for the observation and exec...
Matthew Hartley, John G. Taylor
BMCBI
2007
176views more  BMCBI 2007»
14 years 11 months ago
Genome Expression Pathway Analysis Tool - Analysis and visualization of microarray gene expression data under genomic, proteomic
Background: Regulation of gene expression is relevant to many areas of biology and medicine, in the study of treatments, diseases, and developmental stages. Microarrays can be use...
Markus Weniger, Julia C. Engelmann, Jörg Schu...
APBC
2004
122views Bioinformatics» more  APBC 2004»
15 years 1 months ago
Integrating Biopathway Databases for Large-scale Modeling and Simulation
Biopathway databases have been developed, such as KEGG and EcoCyc, that compile interaction structures of biopathways together with biological annotations. However, these biopathw...
Masao Nagasaki, Atsushi Doi, Hiroshi Matsuno, Sato...
ATAL
2003
Springer
15 years 4 months ago
A multi-agent system for the quantitative simulation of biological networks
We apply the multi-agent system (MAS) platform to the task of biological network simulation. In this paper, we describe the simulation of signal transduction (ST) networks using t...
Salim Khan, Ravi Makkena, Foster McGeary, Keith S....