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131
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ICDE
2012
IEEE
203views Database» more  ICDE 2012»
13 years 5 months ago
Parameter-Free Determination of Distance Thresholds for Metric Distance Constraints
—The importance of introducing distance constraints to data dependencies, such as differential dependencies (DDs) [28], has recently been recognized. The metric distance constrai...
Shaoxu Song, Lei Chen 0002, Hong Cheng
145
Voted
KDD
2006
ACM
156views Data Mining» more  KDD 2006»
16 years 3 months ago
Discovering significant OPSM subspace clusters in massive gene expression data
Order-preserving submatrixes (OPSMs) have been accepted as a biologically meaningful subspace cluster model, capturing the general tendency of gene expressions across a subset of ...
Byron J. Gao, Obi L. Griffith, Martin Ester, Steve...
128
Voted
RECOMB
2005
Springer
16 years 2 months ago
Pairwise Local Alignment of Protein Interaction Networks Guided by Models of Evolution
Abstract. With ever increasing amount of available data on protein-protein interaction (PPI) networks and research revealing that these networks evolve at a modular level, discover...
Mehmet Koyutürk, Ananth Grama, Wojciech Szpan...
APBC
2004
108views Bioinformatics» more  APBC 2004»
15 years 4 months ago
Ladderlike Stepping and Interval Jumping Searching Algorithms for DNA Sequences
In this study we have designed a novel algorithm for searching common segments in multiple DNA sequences. To improve efficiency in pattern searching, combination of hashing encodi...
Tun-Wen Pai, Margaret Dah-Tsyr Chang, Jia-Han Chu,...
140
Voted
BMCBI
2006
119views more  BMCBI 2006»
15 years 2 months ago
LS-NMF: A modified non-negative matrix factorization algorithm utilizing uncertainty estimates
Background: Non-negative matrix factorisation (NMF), a machine learning algorithm, has been applied to the analysis of microarray data. A key feature of NMF is the ability to iden...
Guoli Wang, Andrew V. Kossenkov, Michael F. Ochs