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» Pattern Discovery and Computational Mechanics
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BMCBI
2007
158views more  BMCBI 2007»
14 years 10 months ago
Penalized likelihood for sparse contingency tables with an application to full-length cDNA libraries
Background: The joint analysis of several categorical variables is a common task in many areas of biology, and is becoming central to systems biology investigations whose goal is ...
Corinne Dahinden, Giovanni Parmigiani, Mark C. Eme...
BMCBI
2007
139views more  BMCBI 2007»
14 years 10 months ago
XSTREAM: A practical algorithm for identification and architecture modeling of tandem repeats in protein sequences
Background: Biological sequence repeats arranged in tandem patterns are widespread in DNA and proteins. While many software tools have been designed to detect DNA tandem repeats (...
Aaron M. Newman, James B. Cooper
BMCBI
2004
150views more  BMCBI 2004»
14 years 9 months ago
Cross-species comparison significantly improves genome-wide prediction of cis-regulatory modules in Drosophila
Background: The discovery of cis-regulatory modules in metazoan genomes is crucial for understanding the connection between genes and organism diversity. It is important to quanti...
Saurabh Sinha, Mark D. Schroeder, Ulrich Unnerstal...
COMGEO
2010
ACM
14 years 8 months ago
Sensor bus: an intermediary layer for linking geosensors and the sensor web
In recent years, the standards of OGC’s Sensor Web Enablement (SWE) initiative have been applied in a multitude of projects to encapsulate heterogeneous geosensors for web-based...
Arne Broering, Theodor Foerster, Simon Jirka, Cars...
HPDC
2008
IEEE
15 years 4 months ago
Ontological framework for a free-form query based grid search engine
If the model of free-form queries, which has proved successful for HTML based search on the Web, is made available for Grid services, it will serve as a powerful tool for scientis...
Chaitali Gupta, Rajdeep Bhowmik, Madhusudhan Govin...