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    BMCBI
    2007
    115views more  BMCBI 2007»
    A novel, fast, HMM-with-Duration implementation - for application with a new, pattern recognition informed, nanopore detector
    14 years 9 months ago
    A novel, fast, HMM-with-Duration implementation - for application with a new, pattern recognition informed, nanopore detector
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    Background: Hidden Markov Models (HMMs) provide an excellent means for structure identification and feature extraction on stochastic sequential data. An HMM-with-Duration (HMMwD) ...
    Stephen Winters-Hilt, Carl Baribault
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    KDD
    2008
    ACM
    183views Data Mining» more  KDD 2008»
    Structured entity identification and document categorization: two tasks with one joint model
    15 years 10 months ago
    Structured entity identification and document categorization: two tasks with one joint model
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    Traditionally, research in identifying structured entities in documents has proceeded independently of document categorization research. In this paper, we observe that these two t...
    Indrajit Bhattacharya, Shantanu Godbole, Sachindra...
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    BMCBI
    2007
    154views more  BMCBI 2007»
    h-Profile plots for the discovery and exploration of patterns in gene expression data with an application to time course data
    14 years 9 months ago
    h-Profile plots for the discovery and exploration of patterns in gene expression data with an application to time course data
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    Background: An ever increasing number of techniques are being used to find genes with similar profiles from microarray studies. Visualization of gene expression profiles can aid t...
    Yvonne E. Pittelkow, Susan R. Wilson
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    BMCBI
    2011
    242views Artificial Intelligence» more  BMCBI 2011»
    Statistical Test of Expression Pattern (STEPath): a new strategy to integrate gene expression data with genomic information in i
    14 years 4 months ago
    Statistical Test of Expression Pattern (STEPath): a new strategy to integrate gene expression data with genomic information in i
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    Background: In the last decades, microarray technology has spread, leading to a dramatic increase of publicly available datasets. The first statistical tools developed were focuse...
    Paolo G. V. Martini, Davide Risso, Gabriele Sales,...
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    BMCBI
    2008
    132views more  BMCBI 2008»
    The SeqWord Genome Browser: an online tool for the identification and visualization of atypical regions of bacterial genomes thr
    14 years 9 months ago
    The SeqWord Genome Browser: an online tool for the identification and visualization of atypical regions of bacterial genomes thr
    Download  www.up.ac.za
    Background: Data mining in large DNA sequences is a major challenge in microbial genomics and bioinformatics. Oligonucleotide usage (OU) patterns provide a wealth of information f...
    Hamilton Ganesan, Anna S. Rakitianskaia, Colin F. ...
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