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ISCA
1995
IEEE
118views Hardware» more  ISCA 1995»
15 years 8 months ago
The EM-X Parallel Computer: Architecture and Basic Performance
Latency tolerance is essential in achieving high performance on parallel computers for remote function calls and fine-grained remote memory accesses. EM-X supports interprocessor ...
Yuetsu Kodama, Hirohumi Sakane, Mitsuhisa Sato, Ha...
ALGORITHMICA
2006
163views more  ALGORITHMICA 2006»
15 years 5 months ago
Building Large Phylogenetic Trees on Coarse-Grained Parallel Machines
Phylogenetic analysis is an area of computational biology concerned with the reconstruction of evolutionary relationships between organisms, genes, and gene families. Maximum likel...
Thomas M. Keane, Andrew J. Page, Thomas J. Naughto...
JCB
2000
129views more  JCB 2000»
15 years 4 months ago
Prediction of RNA Base Pairing Probabilities on Massively Parallel Computers
We present an implementation of McCaskill's algorithm for computing the base pair probabilities of an RNA molecule for massively parallel message passing architectures. The p...
Martin Fekete, Ivo L. Hofacker, Peter F. Stadler
IPPS
2008
IEEE
15 years 11 months ago
Reducing the run-time of MCMC programs by multithreading on SMP architectures
The increasing availability of multi-core and multiprocessor architectures provides new opportunities for improving the performance of many computer simulations. Markov Chain Mont...
Jonathan M. R. Byrd, Stephen A. Jarvis, A. H. Bhal...
PVM
2010
Springer
15 years 2 months ago
Efficient MPI Support for Advanced Hybrid Programming Models
The number of multithreaded Message Passing Interface (MPI) implementations and applications is increasing rapidly. We discuss how multithreaded applications can receive messages o...
Torsten Hoefler, Greg Bronevetsky, Brian Barrett, ...