We present an optimized parallelization scheme for molecular dynamics simulations of large biomolecular systems, implemented in the production-quality molecular dynamics program N...
Robert Brunner, James C. Phillips, Laxmikant V. Ka...
The MILAN project, a joint effort involving Arizona State University and New York University, has produced and validated fundamental techniques for the realization of efficient, r...
Abstract—This paper describes an algorithm for deriving data and computation partitions on scalable shared memory multiprocessors. The algorithm establishes affinity relationshi...
Although platform-independent runtime systems for parallel programming languages are desirable, the need for low-level optimizations usually precludes their existence. This is bec...
A concurrent partitioner for partitioning unstructured finite element meshes on distributed memory architectures is developed. The partitioner uses an element-based partitioning st...