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GCC
2007
Springer
15 years 9 months ago
Improving the Performance of MPI Applications over Computational Grid
The Message Passing Interface (MPI) is a standard in parallel computing, and can also be used as a highperformance programming model for Grid application development. How to execu...
Bo Song, Guangwen Yang, Qiming Fang
HPCC
2007
Springer
15 years 9 months ago
Towards Scalable Event Tracing for High End Systems
Although event tracing of parallel applications offers highly detailed performance information, tracing on current leading edge systems may lead to unacceptable perturbation of the...
Kathryn Mohror, Karen L. Karavanic
AINA
2006
IEEE
15 years 9 months ago
Accelerating the HMMER Sequence Analysis Suite Using Conventional Processors
Due to the ever-increasing size of sequence databases it has become clear that faster techniques must be employed to effectively perform biological sequence analysis in a reasonab...
John Paul Walters, Bashar Qudah, Vipin Chaudhary
IPPS
2006
IEEE
15 years 9 months ago
An experimental study of optimizing bioinformatics applications
As bioinformatics is an emerging application of high performance computing, this paper first evaluates the memory performance of several representative bioinformatics application...
Guangming Tan, Lin Xu, Shengzhong Feng, Ninghui Su...
IPPS
2006
IEEE
15 years 9 months ago
A decomposition approach for optimizing the performance of MPI libraries
MPI provides a portable message passing interface for many parallel execution platforms but may lead to inefficiencies for some platforms and applications. In this article we sho...
O. Hartmann, Matthias Kühnemann, Thomas Raube...