Sciweavers

272 search results - page 25 / 55
» Patterns for programming in parallel, pedagogically
Sort
View
IPPS
2009
IEEE
15 years 4 months ago
Dynamic parallelization for RNA structure comparison
In this paper we describe the parallelization of a dynamic programming algorithm used to find common RNA secondary structures including pseudoknots and similar structures. The se...
Eric Snow, Eric Aubanel, Patricia Evans
HIPC
2000
Springer
15 years 1 months ago
Meta-data Management System for High-Performance Large-Scale Scientific Data Access
Many scientific applications manipulate large amount of data and, therefore, are parallelized on high-performance computing systems to take advantage of their computational power a...
Wei-keng Liao, Xiaohui Shen, Alok N. Choudhary
SC
2003
ACM
15 years 3 months ago
Fast Parallel Non-Contiguous File Access
Many applications of parallel I/O perform non-contiguous file accesses: instead of accessing a single (large) block of data in a file, a number of (smaller) blocks of data scatt...
Joachim Worringen, Jesper Larsson Träff, Hube...
CGO
2004
IEEE
15 years 1 months ago
Custom Data Layout for Memory Parallelism
In this paper, we describe a generalized approach to deriving a custom data layout in multiple memory banks for array-based computations, to facilitate high-bandwidth parallel mem...
Byoungro So, Mary W. Hall, Heidi E. Ziegler
ALGORITHMICA
2005
195views more  ALGORITHMICA 2005»
14 years 9 months ago
Bit-Parallel Witnesses and Their Applications to Approximate String Matching
We present a new bit-parallel technique for approximate string matching. We build on two previous techniques. The first one, BPM [Myers, J. of the ACM, 1999], searches for a patte...
Heikki Hyyrö, Gonzalo Navarro