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PPSC
1997
15 years 5 months ago
High-Performance Object-Oriented Scientific Programming in Fortran 90
We illustrate how Fortran 90 supports object-oriented concepts by example of plasma particle computations on the IBM SP. Our experience shows that Fortran 90 and object-oriented m...
Charles D. Norton, Viktor K. Decyk, Boleslaw K. Sz...
BMCBI
2010
122views more  BMCBI 2010»
15 years 3 months ago
Fast and accurate protein substructure searching with simulated annealing and GPUs
Background: Searching a database of protein structures for matches to a query structure, or occurrences of a structural motif, is an important task in structural biology and bioin...
Alex Stivala, Peter J. Stuckey, Anthony Wirth
ICS
2009
Tsinghua U.
15 years 10 months ago
Dynamic topology aware load balancing algorithms for molecular dynamics applications
Molecular Dynamics applications enhance our understanding of biological phenomena through bio-molecular simulations. Large-scale parallelization of MD simulations is challenging b...
Abhinav Bhatele, Laxmikant V. Kalé, Sameer ...
HPDC
1997
IEEE
15 years 8 months ago
Supporting Parallel Applications on Clusters of Workstations: The Intelligent Network Interface Approach
This paper presents a novel networking architecture designed for communication intensive parallel applications running on clusters of workstations (COWs) connected by highspeed ne...
Marcel-Catalin Rosu, Karsten Schwan, Richard Fujim...
IJCNN
2006
IEEE
15 years 9 months ago
Event modeling of message interchange in stochastic neural ensembles
— We propose a modeling framework based on the event-driven paradigm for populations of neurons which interchange messages. Unlike other strategies our approach is focused on the...
Vicenç Gómez, Andreas Kaltenbrunner,...