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BMCBI
2010
110views more  BMCBI 2010»
14 years 10 months ago
On the use of resampling tests for evaluating statistical significance of binding-site co-occurrence
Background: In eukaryotes, most DNA-binding proteins exert their action as members of large effector complexes. The presence of these complexes are revealed in high-throughput gen...
David S. Huen, Steven Russell
IPPS
2008
IEEE
15 years 4 months ago
On the representation and multiplication of hypersparse matrices
Multicore processors are marking the beginning of a new era of computing where massive parallelism is available and necessary. Slightly slower but easy to parallelize kernels are ...
Aydin Buluç, John R. Gilbert
SBACPAD
2003
IEEE
138views Hardware» more  SBACPAD 2003»
15 years 3 months ago
Finite Difference Simulations of the Navier-Stokes Equations Using Parallel Distributed Computing
 This paper discusses the implementation of a numerical algorithm for simulating incompressible fluid flows based on the finite difference method and designed for parallel compu...
João Paulo De Angeli, Andréa M. P. V...
HPCA
2006
IEEE
15 years 10 months ago
Exploiting parallelism and structure to accelerate the simulation of chip multi-processors
Simulation is an important means of evaluating new microarchitectures. Current trends toward chip multiprocessors (CMPs) try the ability of designers to develop efficient simulato...
David A. Penry, Daniel Fay, David Hodgdon, Ryan We...
WWW
2010
ACM
15 years 5 months ago
Fast and parallel webpage layout
The web browser is a CPU-intensive program. Especially on mobile devices, webpages load too slowly, expending significant time in processing a document’s appearance. Due to powe...
Leo A. Meyerovich, Rastislav Bodík