685 search results - page 27 / 137 » Performance of Runtime Optimization on BLAST |
125
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IPPS
2006
IEEE
15 years 11 months ago
2006
IEEE
UPC’s implicit communication and fine-grain programming style make application performance modeling a challenging task. The correspondence between remote references and communi...
152
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GECCO
2010
Springer
15 years 10 months ago
2010
Springer
This paper presents results of the BBOB-2009 benchmarking of 31 search algorithms on 24 noiseless functions in a black-box optimization scenario in continuous domain. The runtime ...
119
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RECOMB
2003
Springer
16 years 5 months ago
2003
Springer
Large-scale comparison of genomic DNA is of fundamental importance in annotating functional elements of genomes. To perform large comparisons efficiently, BLAST (Methods: Companio...
117
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CSB
2004
IEEE
15 years 9 months ago
2004
IEEE
We describe a novel hardware architecture for genomic and proteomic sequence alignment which achieves a speed-up of two to three orders of magnitude over Smith-Waterman dynamic pr...
136
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RECONFIG
2009
IEEE
15 years 12 months ago
2009
IEEE
BLASTn is a ubiquitous tool used for large scale DNA analysis. Detailed profiling tests reveal that the most computationally intensive sections of the BLASTn algorithm are the sc...