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BMCBI
2011
14 years 8 months ago
PeakRanger: A cloud-enabled peak caller for ChIP-seq data
Background: Chromatin immunoprecipitation (ChIP), coupled with massively parallel short-read sequencing (seq) is used to probe chromatin dynamics. Although there are many algorith...
Xin Feng, Robert Grossman, Lincoln Stein
155
Voted
IPPS
1999
IEEE
15 years 9 months ago
Dynamic Process Composition and Communication Patterns in Irregularly Structured Applications
In this paper we describe one experiment in which a new coordination language, called MANIFOLD, is used to restructure an existing sequential Fortran code from computational uid dy...
C. T. H. Everaars, Barry Koren, Farhad Arbab
ICFP
2008
ACM
16 years 4 months ago
A scheduling framework for general-purpose parallel languages
The trend in microprocessor design toward multicore and manycore processors means that future performance gains in software will largely come from harnessing parallelism. To reali...
Matthew Fluet, Mike Rainey, John H. Reppy
JPDC
2010
106views more  JPDC 2010»
15 years 3 months ago
Feedback-directed page placement for ccNUMA via hardware-generated memory traces
Non-uniform memory architectures with cache coherence (ccNUMA) are becoming increasingly common, not just for large-scale high performance platforms but also in the context of mul...
Jaydeep Marathe, Vivek Thakkar, Frank Mueller
IPPS
1998
IEEE
15 years 9 months ago
High Performance Linear Algebra Package LAPACK90
Abstract. LAPACK90 is a set of LAPACK90 subroutines which interfaces FORTRAN90 with LAPACK. All LAPACK driver subroutines including expert drivers and some LAPACK computationals ha...
Jack Dongarra, Jerzy Wasniewski