With the widespread use of BLAST, many parallel versions of BLAST on cluster systems are announced, but little work has been done for the parallel execution in the search for indi...
This paper summarizes the design and implementation of a parallel algorithm for state assignment of large Finite State Machines (FSMs). High performance CAD tools are necessary to...
Molecular dynamics simulations are a common and often repeated task in molecular biology. The need for speeding up this treatment comes from the requirement for large system simula...
Weiguo Liu, Bertil Schmidt, Gerrit Voss, Wolfgang ...
In this paper we investigate the applicability of classic dynamic loop scheduling methods on a numerical simulation code that calculates the trajectories of charged particles in t...
Ioannis Riakiotakis, Georgios I. Goumas, Nectarios...
We present a number of optimization techniques to compute prefix sums on linked lists and implement them on multithreaded GPUs using CUDA. Prefix computations on linked structures ...