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» Performance prediction based on inherent program similarity
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BMCBI
2007
134views more  BMCBI 2007»
14 years 10 months ago
Efficient pairwise RNA structure prediction using probabilistic alignment constraints in Dynalign
Background: Joint alignment and secondary structure prediction of two RNA sequences can significantly improve the accuracy of the structural predictions. Methods addressing this p...
Arif Ozgun Harmanci, Gaurav Sharma, David H. Mathe...
OOPSLA
2009
Springer
15 years 4 months ago
Parallel programming with object assemblies
We present Chorus, a high-level parallel programming model suitable for irregular, heap-manipulating applications like mesh refinement and epidemic simulations, and JChorus, an i...
Roberto Lublinerman, Swarat Chaudhuri, Pavol Cern&...
PLDI
1997
ACM
15 years 1 months ago
Incremental Analysis of real Programming Languages
A major research goal for compilers and environments is the automatic derivation of tools from formal specifications. However, the formal model of the language is often inadequat...
Tim A. Wagner, Susan L. Graham
ICML
2007
IEEE
15 years 10 months ago
Structural alignment based kernels for protein structure classification
Structural alignments are the most widely used tools for comparing proteins with low sequence similarity. The main contribution of this paper is to derive various kernels on prote...
Sourangshu Bhattacharya, Chiranjib Bhattacharyya, ...
BMCBI
2010
125views more  BMCBI 2010»
14 years 10 months ago
In-silico prediction of blood-secretory human proteins using a ranking algorithm
Background: Computational identification of blood-secretory proteins, especially proteins with differentially expressed genes in diseased tissues, can provide highly useful inform...
Qi Liu, Juan Cui, Qiang Yang, Ying Xu