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BMCBI
2010
109views more  BMCBI 2010»
14 years 10 months ago
FPGA acceleration of the phylogenetic likelihood function for Bayesian MCMC inference methods
Background: Likelihood (ML)-based phylogenetic inference has become a popular method for estimating the evolutionary relationships among species based on genomic sequence data. Th...
Stephanie Zierke, Jason D. Bakos
IPPS
2010
IEEE
14 years 7 months ago
Clustering JVMs with software transactional memory support
Affordable transparent clustering solutions to scale non-HPC applications on commodity clusters (such as Terracotta) are emerging for Java Virtual Machines (JVMs). Working in this ...
Christos Kotselidis, Mikel Luján, Mohammad ...
CLUSTER
2009
IEEE
15 years 4 months ago
Scalable I/O forwarding framework for high-performance computing systems
—Current leadership-class machines suffer from a significant imbalance between their computational power and their I/O bandwidth. While Moore’s law ensures that the computatio...
Nawab Ali, Philip H. Carns, Kamil Iskra, Dries Kim...
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CLUSTER
2004
IEEE
15 years 1 months ago
RFS: efficient and flexible remote file access for MPI-IO
Scientific applications often need to access remote file systems. Because of slow networks and large data size, however, remote I/O can become an even more serious performance bot...
Jonghyun Lee, Robert B. Ross, Rajeev Thakur, Xiaos...
MIDDLEWARE
2009
Springer
15 years 4 months ago
Rhizoma: A Runtime for Self-deploying, Self-managing Overlays
Abstract. The trend towards cloud and utility computing infrastructures raises challenges not only for application development, but also for management: diverse resources, changing...
Qin Yin, Adrian Schüpbach, Justin Cappos, And...