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» Petri net modelling of biological networks
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BMCBI
2011
14 years 1 months ago
RegNetB: Predicting Relevant Regulator-Gene Relationships in Localized Prostate Tumor Samples
Background: A central question in cancer biology is what changes cause a healthy cell to form a tumor. Gene expression data could provide insight into this question, but it is dif...
Angel Alvarez, Peter J. Woolf
VVEIS
2007
14 years 10 months ago
UML-driven Information Systems and their Formal Integration Validation and Distribution
Being the de-facto standard (object-oriented-OO) method(-logy) for software-intensive systems development, UML with its different diagrams and supporting tools represent nowadays t...
Nasreddine Aoumeur, Gunter Saake
CLUSTER
2009
IEEE
15 years 4 months ago
Combining I/O operations for multiple array variables in parallel netCDF
—Parallel netCDF (PnetCDF) is a popular library used in many scientific applications to store scientific datasets. It provides high-performance parallel I/O while maintaining ...
Kui Gao, Wei-keng Liao, Alok N. Choudhary, Robert ...
BIBE
2007
IEEE
149views Bioinformatics» more  BIBE 2007»
15 years 1 months ago
XML Encoding of Features Describing Rule-Based Modeling of Reaction Networks with Multi-Component Molecular Complexes
Multi-state molecules and multi-component complexes are commonly involved in cellular signaling. Accounting for molecules that have multiple potential states, such as a protein tha...
Michael L. Blinov, Ion I. Moraru
79
Voted
ACSD
2003
IEEE
151views Hardware» more  ACSD 2003»
15 years 2 months ago
Communicating Transaction Processes
Message Sequence Charts (MSC) have been traditionally used to depict execution scenarios in the early stages of design cycle. MSCs portray inter-process ( inter-object) interactio...
Abhik Roychoudhury, P. S. Thiagarajan