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» Petri net modelling of biological networks
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NC
2010
146views Neural Networks» more  NC 2010»
14 years 8 months ago
Petri nets for modelling metabolic pathways: a survey
Abstract. In the last fifteen years, several research efforts have been directed towards the representation and the analysis of metabolic pathways by using Petri nets. The goal o...
Paolo Baldan, Nicoletta Cocco, Andrea Marin, Marta...
IWIA
2006
IEEE
15 years 3 months ago
Modeling and Execution of Complex Attack Scenarios using Interval Timed Colored Petri Nets
The commonly used flaw hypothesis model (FHM) for performing penetration tests provides only limited, highlevel guidance for the derivation of actual penetration attempts. In thi...
Ole Martin Dahl, Stephen D. Wolthusen
ATVA
2009
Springer
142views Hardware» more  ATVA 2009»
15 years 1 months ago
TAPAAL: Editor, Simulator and Verifier of Timed-Arc Petri Nets
TAPAAL is a new platform independent tool for modelling, simulation and verification of timed-arc Petri nets. TAPAAL provides a stand-alone editor and simulator, while the verifica...
Joakim Byg, Kenneth Yrke Jørgensen, Jir&iac...
BMCBI
2010
126views more  BMCBI 2010»
14 years 9 months ago
Simulation of a Petri net-based Model of the Terpenoid Biosynthesis Pathway
Background: The development and simulation of dynamic models of terpenoid biosynthesis has yielded a systems perspective that provides new insights into how the structure of this ...
Aliah Hazmah Hawari, Zeti-Azura Mohamed-Hussein
CIBCB
2007
IEEE
15 years 3 months ago
Spectral Decomposition of Signaling Networks
—Many dynamical processes can be represented as directed attributed graphs or Petri nets where relationships between various entities are explicitly expressed. Signaling networks...
Bahram Parvin, Nirmalya Ghosh, Laura Heiser, Merri...