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» Petri nets for modelling metabolic pathways: a survey
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SCESM
2006
ACM
266views Algorithms» more  SCESM 2006»
15 years 3 months ago
A comparative survey of scenario-based to state-based model synthesis approaches
Model Driven Development and Use Case Driven Development methodologies have inspired the proposal of a variety of software engineering approaches that synthesize statebased models...
Hongzhi Liang, Jürgen Dingel, Zinovy Diskin
FMCO
2009
Springer
161views Formal Methods» more  FMCO 2009»
14 years 7 months ago
The How and Why of Interactive Markov Chains
This paper reviews the model of interactive Markov chains (IMCs, for short), an extension of labelled transition systems with exponentially delayed transitions. We show that IMCs a...
Holger Hermanns, Joost-Pieter Katoen
PE
2010
Springer
135views Optimization» more  PE 2010»
14 years 4 months ago
Performance evaluation of component-based software systems: A survey
Performance prediction and measurement approaches for component-based software systems help software architects to evaluate their systems based on component performance specificat...
Heiko Koziolek
ILP
2005
Springer
15 years 2 months ago
Machine Learning for Systems Biology
In this paper we survey work being conducted at Imperial College on the use of machine learning to build Systems Biology models of the effects of toxins on biochemical pathways. Se...
Stephen Muggleton
RECOMB
2004
Springer
15 years 9 months ago
Modeling and Analysis of Heterogeneous Regulation in Biological Networks
Abstract. In this study we propose a novel model for the representation of biological networks and provide algorithms for learning model parameters from experimental data. Our appr...
Irit Gat-Viks, Amos Tanay, Ron Shamir