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» Petruchio: From Dynamic Networks to Nets
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BMCBI
2010
110views more  BMCBI 2010»
14 years 9 months ago
Towards the systematic discovery of signal transduction networks using phosphorylation dynamics data
Background: Phosphorylation is a ubiquitous and fundamental regulatory mechanism that controls signal transduction in living cells. The number of identified phosphoproteins and th...
Haruna Imamura, Nozomu Yachie, Rintaro Saito, Yasu...
BMCBI
2007
107views more  BMCBI 2007»
14 years 9 months ago
Progressive multiple sequence alignments from triplets
Motivation: The quality of progressive sequence alignments strongly depends on the accuracy of the individual pairwise alignment steps since gaps that are introduced at one step c...
Matthias Kruspe, Peter F. Stadler
CASES
2006
ACM
15 years 3 months ago
A case study of multi-threading in the embedded space
The continuing miniaturization of technology coupled with wireless networks has made it feasible to physically embed sensor network systems into the environment. Sensor net proces...
Greg Hoover, Forrest Brewer, Timothy Sherwood
GECCO
2005
Springer
204views Optimization» more  GECCO 2005»
15 years 2 months ago
Modeling systems with internal state using evolino
Existing Recurrent Neural Networks (RNNs) are limited in their ability to model dynamical systems with nonlinearities and hidden internal states. Here we use our general framework...
Daan Wierstra, Faustino J. Gomez, Jürgen Schm...
CSCWD
2001
Springer
15 years 1 months ago
Modeling Workflow within Distributed Systems
Workflow management techniques are aiming at supporting business process across organization boundaries. Current techniques are lacking of the formalism tools to model and analyze...
Yuhong Yan, Alex Bejan