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BMCBI
2010
104views more  BMCBI 2010»
14 years 8 months ago
A systematic study of genome context methods: calibration, normalization and combination
Background: Genome context methods have been introduced in the last decade as automatic methods to predict functional relatedness between genes in a target genome using the patter...
Luciana Ferrer, Joseph M. Dale, Peter D. Karp
JAIR
2008
94views more  JAIR 2008»
15 years 1 months ago
The Ultrametric Constraint and its Application to Phylogenetics
A phylogenetic tree shows the evolutionary relationships among species. Internal nodes of the tree represent speciation events and leaf nodes correspond to species. A goal of phyl...
Neil C. A. Moore, Patrick Prosser
BIOINFORMATICS
2008
106views more  BIOINFORMATICS 2008»
15 years 1 months ago
Interactive visualization software for exploring phylogenetic trees and clades
The Summary Tree Explorer (STE) is a Java application for interactively exploring sets of phylogenetic trees using two coupled representations: a node-and-link diagram and a textu...
Mark Derthick
ALGORITHMICA
1999
87views more  ALGORITHMICA 1999»
15 years 1 months ago
The Performance of Neighbor-Joining Methods of Phylogenetic Reconstruction
We analyze the performance of the popular class of neighbor-joining methods of phylogeny reconstruction. In particular, we find conditions under which these methods will determine ...
Kevin Atteson
ACIIDS
2010
IEEE
153views Database» more  ACIIDS 2010»
15 years 2 months ago
Visualization of Influenza Protein Segment HA in Manifold Space
Due to the lateral gene transfer, the phylogenetic tree may be inadequate for representing the evolution of Influenza A (H1N1) virus. This work employs the distance invariant manif...
Cheng-Yuan Liou, Wei-Chen Cheng