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BMCBI
2010
104views more  BMCBI 2010»
14 years 6 months ago
A systematic study of genome context methods: calibration, normalization and combination
Background: Genome context methods have been introduced in the last decade as automatic methods to predict functional relatedness between genes in a target genome using the patter...
Luciana Ferrer, Joseph M. Dale, Peter D. Karp
JAIR
2008
94views more  JAIR 2008»
14 years 11 months ago
The Ultrametric Constraint and its Application to Phylogenetics
A phylogenetic tree shows the evolutionary relationships among species. Internal nodes of the tree represent speciation events and leaf nodes correspond to species. A goal of phyl...
Neil C. A. Moore, Patrick Prosser
BIOINFORMATICS
2008
106views more  BIOINFORMATICS 2008»
14 years 12 months ago
Interactive visualization software for exploring phylogenetic trees and clades
The Summary Tree Explorer (STE) is a Java application for interactively exploring sets of phylogenetic trees using two coupled representations: a node-and-link diagram and a textu...
Mark Derthick
ALGORITHMICA
1999
87views more  ALGORITHMICA 1999»
14 years 11 months ago
The Performance of Neighbor-Joining Methods of Phylogenetic Reconstruction
We analyze the performance of the popular class of neighbor-joining methods of phylogeny reconstruction. In particular, we find conditions under which these methods will determine ...
Kevin Atteson
ACIIDS
2010
IEEE
153views Database» more  ACIIDS 2010»
15 years 25 days ago
Visualization of Influenza Protein Segment HA in Manifold Space
Due to the lateral gene transfer, the phylogenetic tree may be inadequate for representing the evolution of Influenza A (H1N1) virus. This work employs the distance invariant manif...
Cheng-Yuan Liou, Wei-Chen Cheng