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COMBINATORICS
2006
102views more  COMBINATORICS 2006»
14 years 11 months ago
Identifying X-Trees with Few Characters
Previous work has shown the perhaps surprising result that, for any binary phylogenetic tree T , there is a set of four characters that define T . Here we deal with the general ca...
Magnus Bordewich, Charles Semple, Mike A. Steel
EOR
2006
110views more  EOR 2006»
14 years 11 months ago
Scatter search with path relinking for phylogenetic inference
We propose the use of scatter search with path relinking for the inference of phylogenetic trees. Solutions are here represented as trees whose leaves span the set of species unde...
Carlos Cotta
IPPS
2009
IEEE
15 years 6 months ago
Exploring FPGAs for accelerating the phylogenetic likelihood function
Driven by novel biological wet lab techniques such as pyrosequencing there has been an unprecedented molecular data explosion over the last 2-3 years. The growth of biological seq...
Nikolaos Alachiotis, Euripides Sotiriades, Apostol...
85
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BMCBI
2008
138views more  BMCBI 2008»
14 years 12 months ago
Automated simultaneous analysis phylogenetics (ASAP): an enabling tool for phlyogenomics
Background: The availability of sequences from whole genomes to reconstruct the tree of life has the potential to enable the development of phylogenomic hypotheses in ways that ha...
Indra Neil Sarkar, Mary G. Egan, Gloria M. Coruzzi...
BMCBI
2007
79views more  BMCBI 2007»
14 years 12 months ago
Orthology prediction at scalable resolution by phylogenetic tree analysis
Background: Orthology is one of the cornerstones of gene function prediction. Dividing the phylogenetic relations between genes into either orthologs or paralogs is however an ove...
René T. J. M. van der Heijden, Berend Snel,...