Background: Protein-protein interactions are critical for cellular functions. Recently developed computational approaches for predicting protein-protein interactions utilize co-ev...
Accurate and efficient inference in evolutionary trees is a central problem in computational biology. While classical treatments have made unrealistic site independence assumption...
Abstract. Hybridization is a reticulate evolutionary process. An established problem on hybridization is computing the minimum number of hybridization events, called the hybridizat...
We study the Bergman complex B(M) of a matroid M: a polyhedral complex which arises in algebraic geometry, but which we describe purely combinatorially. We prove that a natural su...
Inference of phylogenetic trees comprising hundreds or even thousands of organisms based on the maximum likelihood method is computationally extremely expensive. In previous work,...