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BMCBI
2007
95views more  BMCBI 2007»
14 years 12 months ago
Phylogenetic tree information aids supervised learning for predicting protein-protein interaction based on distance matrices
Background: Protein-protein interactions are critical for cellular functions. Recently developed computational approaches for predicting protein-protein interactions utilize co-ev...
Roger A. Craig, Li Liao
NIPS
2008
15 years 1 months ago
Efficient Inference in Phylogenetic InDel Trees
Accurate and efficient inference in evolutionary trees is a central problem in computational biology. While classical treatments have made unrealistic site independence assumption...
Alexandre Bouchard-Côté, Michael I. J...
ISBRA
2010
Springer
15 years 6 months ago
Fast Computation of the Exact Hybridization Number of Two Phylogenetic Trees
Abstract. Hybridization is a reticulate evolutionary process. An established problem on hybridization is computing the minimum number of hybridization events, called the hybridizat...
Yufeng Wu, Jiayin Wang
JCT
2006
69views more  JCT 2006»
14 years 11 months ago
The Bergman complex of a matroid and phylogenetic trees
We study the Bergman complex B(M) of a matroid M: a polyhedral complex which arises in algebraic geometry, but which we describe purely combinatorially. We prove that a natural su...
Federico Ardila, Caroline J. Klivans
IPPS
2003
IEEE
15 years 5 months ago
Phylogenetic Tree Inference on PC Architectures with AxML/PAxML
Inference of phylogenetic trees comprising hundreds or even thousands of organisms based on the maximum likelihood method is computationally extremely expensive. In previous work,...
Alexandros Stamatakis, Thomas Ludwig 0002