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BMCBI
2006
116views more  BMCBI 2006»
14 years 12 months ago
Whole genome association mapping by incompatibilities and local perfect phylogenies
Background: With current technology, vast amounts of data can be cheaply and efficiently produced in association studies, and to prevent data analysis to become the bottleneck of ...
Thomas Mailund, Søren Besenbacher, Mikkel H...
IPL
2006
72views more  IPL 2006»
14 years 11 months ago
Structure and linear time recognition of 3-leaf powers
A graph G is the k-leaf power of a tree T if its vertices are leaves of T such that two vertices are adjacent in G if and only if their distance in T is at most k. Then T is the k...
Andreas Brandstädt, Van Bang Le
SSDBM
2002
IEEE
122views Database» more  SSDBM 2002»
15 years 4 months ago
ATreeGrep: Approximate Searching in Unordered Trees
An unordered labeled tree is a tree in which each node has a string label and the parent-child relationship is significant, but the order among siblings is unimportant. This pape...
Dennis Shasha, Jason Tsong-Li Wang, Huiyuan Shan, ...
UAI
2008
15 years 1 months ago
The Phylogenetic Indian Buffet Process: A Non-Exchangeable Nonparametric Prior for Latent Features
Nonparametric Bayesian models are often based on the assumption that the objects being modeled are exchangeable. While appropriate in some applications (e.g., bag-ofwords models f...
Kurt T. Miller, Thomas L. Griffiths, Michael I. Jo...
ISBRA
2010
Springer
15 years 6 months ago
Uncovering Hidden Phylogenetic Consensus
Abstract. Many of the steps in phylogenetic reconstruction can be confounded by “rogue” taxa, taxa that cannot be placed with assurance anywhere within the tree—whose locatio...
Nicholas D. Pattengale, Krister M. Swenson, Bernar...