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CIBCB
2007
IEEE
15 years 6 months ago
An Experimental Evaluation of Inversion-and Transposition-Based Genomic Distances through Simulations
— Rearrangements of genes and other syntenic blocks have become a topic of intensive study by phylogenists, comparative genomicists, and computational biologists: they are a feat...
Moulik Kothari, Bernard M. E. Moret
BMCBI
2006
112views more  BMCBI 2006»
14 years 12 months ago
A phylogenomic gene cluster resource: the Phylogenetically Inferred Groups (PhIGs) database
Background: We present here the PhIGs database, a phylogenomic resource for sequenced genomes. Although many methods exist for clustering gene families, very few attempt to create...
Paramvir S. Dehal, Jeffrey L. Boore
BMCBI
2008
125views more  BMCBI 2008»
14 years 12 months ago
XplorSeq: A software environment for integrated management and phylogenetic analysis of metagenomic sequence data
Background: Advances in automated DNA sequencing technology have accelerated the generation of metagenomic DNA sequences, especially environmental ribosomal RNA gene (rDNA) sequen...
Daniel N. Frank
BMCBI
2007
106views more  BMCBI 2007»
14 years 12 months ago
Constructing a meaningful evolutionary average at the phylogenetic center of mass
Background: As a consequence of the evolutionary process, data collected from related species tend to be similar. This similarity by descent can obscure subtler signals in the dat...
Eric A. Stone, Arend Sidow
CADE
2010
Springer
15 years 28 days ago
Automated Synthesis of Induction Axioms for Programs with Second-Order Recursion
In order to support the verification of programs, verification tools such as ACL2 or Isabelle try to extract suitable induction axioms from the definitions of terminating, recursiv...
Markus Aderhold