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IJCBDD
2008
113views more  IJCBDD 2008»
14 years 12 months ago
Parsimony accelerated Maximum Likelihood searches
: Phylogenetic search is a key tool used in a variety of biological research endeavors. However, this search problem is known to be computationally difficult, due to the astronomic...
Kenneth Sundberg, Timothy O'Connor, Hyrum Carroll,...
BMCBI
2007
148views more  BMCBI 2007»
14 years 12 months ago
BPhyOG: An interactive server for genome-wide inference of bacterial phylogenies based on overlapping genes
Background: Overlapping genes (OGs) in bacterial genomes are pairs of adjacent genes of which the coding sequences overlap partly or entirely. With the rapid accumulation of seque...
Yingqin Luo, Cong Fu, Da-Yong Zhang, Kui Lin
BMCBI
2008
91views more  BMCBI 2008»
14 years 12 months ago
t2prhd: a tool to study the patterns of repeat evolution
Background: The models developed to characterize the evolution of multigene families (such as the birth-and-death and the concerted models) have also been applied on the level of ...
Botond Sipos, Kálmán Somogyi, Istv&a...
COCOA
2008
Springer
15 years 1 months ago
Simplicial Powers of Graphs
In a finite simple undirected graph, a vertex is simplicial if its neighborhood is a clique. We say that, for k 2, a graph G = (VG, EG) is the k-simplicial power of a graph H = (V...
Andreas Brandstädt, Van Bang Le
DAM
2007
153views more  DAM 2007»
14 years 11 months ago
Computing the minimum number of hybridization events for a consistent evolutionary history
It is now well-documented that the structure of evolutionary relationships between a set of present-day species is not necessarily tree-like. The reason for this is that reticulat...
Magnus Bordewich, Charles Semple