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RECOMB
2006
Springer
16 years 1 months ago
Detecting the Dependent Evolution of Biosequences
Abstract. A probabilistic graphical model is developed in order to detect the dependent evolution between different sites in biological sequences. Given a multiple sequence alignme...
Jeremy Darot, Chen-Hsiang Yeang, David Haussler
EMNLP
2007
15 years 3 months ago
A Probabilistic Approach to Diachronic Phonology
We present a probabilistic model of diachronic phonology in which individual word forms undergo stochastic edits along the branches of a phylogenetic tree. Our approach allows us ...
Alexandre Bouchard-Côté, Percy Liang,...
NIPS
2007
15 years 2 months ago
A Probabilistic Approach to Language Change
We present a probabilistic approach to language change in which word forms are represented by phoneme sequences that undergo stochastic edits along the branches of a phylogenetic ...
Alexandre Bouchard-Côté, Percy Liang,...
NAR
2007
117views more  NAR 2007»
15 years 1 months ago
FGF: A web tool for Fishing Gene Family in a whole genome database
Gene duplication is an important process in evolution. The availability of genome sequences of a number of organisms has made it possible to conduct comprehensive searches for dup...
Hongkun Zheng, Junjie Shi, Xiaodong Fang, Yuan Li,...
ALMOB
2008
131views more  ALMOB 2008»
15 years 1 months ago
Fast algorithms for computing sequence distances by exhaustive substring composition
The increasing throughput of sequencing raises growing needs for methods of sequence analysis and comparison on a genomic scale, notably, in connection with phylogenetic tree reco...
Alberto Apostolico, Olgert Denas