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RECOMB
2006
Springer
16 years 4 days ago
Detecting the Dependent Evolution of Biosequences
Abstract. A probabilistic graphical model is developed in order to detect the dependent evolution between different sites in biological sequences. Given a multiple sequence alignme...
Jeremy Darot, Chen-Hsiang Yeang, David Haussler
EMNLP
2007
15 years 1 months ago
A Probabilistic Approach to Diachronic Phonology
We present a probabilistic model of diachronic phonology in which individual word forms undergo stochastic edits along the branches of a phylogenetic tree. Our approach allows us ...
Alexandre Bouchard-Côté, Percy Liang,...
NIPS
2007
15 years 1 months ago
A Probabilistic Approach to Language Change
We present a probabilistic approach to language change in which word forms are represented by phoneme sequences that undergo stochastic edits along the branches of a phylogenetic ...
Alexandre Bouchard-Côté, Percy Liang,...
NAR
2007
117views more  NAR 2007»
14 years 11 months ago
FGF: A web tool for Fishing Gene Family in a whole genome database
Gene duplication is an important process in evolution. The availability of genome sequences of a number of organisms has made it possible to conduct comprehensive searches for dup...
Hongkun Zheng, Junjie Shi, Xiaodong Fang, Yuan Li,...
ALMOB
2008
131views more  ALMOB 2008»
14 years 12 months ago
Fast algorithms for computing sequence distances by exhaustive substring composition
The increasing throughput of sequencing raises growing needs for methods of sequence analysis and comparison on a genomic scale, notably, in connection with phylogenetic tree reco...
Alberto Apostolico, Olgert Denas